Compared with the rapid development of educational technology, the management system of educational technology in colleges and universities is obviously lagging and uncoordinated. The backward management system not only wastes precious educational resources, but also hinders the development of educational technology itself in colleges and universities. The article starts from the historical evolution of the educational technology management system in colleges and universities. Analyze the problems existing in the current management system and the causes behind the problems, and on this basis, put forward suggestions and strategies for improvement from the aspects of organizational restructuring, establishment of new operating mechanisms, and team building.